Archive for the ‘Resources & Tools’ Category

AtomBOB suggests a Phoronix review comparing the performance of a Quadro graphics card on Windows Vista Ultimate, Solaris Express Developer, and Ubuntu Linux. The graphics card used was a NVIDIA Quadro FX 1700 mid-range workstation part. The cross-platform benchmark used was SPECViewPerf 9.0 from SPEC. Quoting Phoronix: “Using the Quadro FX1700 512MB and the latest display drivers, Windows Vista wasn’t the decisive winner, but the loser… Ubuntu 8.04 Alpha 5 with the 169.12 driver had overall produced the fastest results within SPECViewPerf. In only three benchmarks had Solaris Express Developer 1/08 outpaced Ubuntu Linux, but with two of these tests the results were almost identical.”"Read more of this story at Slashdot.

Popularity: 54% [?]

FTP:

admin

  FTP [26] is one of the most useful and powerful TCP/IP utilities for
   the general user. FTP allows users to upload and download files
   between local and remote hosts. Anonymous FTP, in particular, is
   commonly available at file archive sites to allow users to access
   files without having to pre-establish an account at the remote host.
   TELNET might, in fact, be used for this purpose but TELNET gives the
   user complete access to the remote system; FTP limits the user to
   file transfer activities.

   The general form of the FTP command is:

         ftp [IP_address|host_name]

   An FTP session can be initiated in several ways. In the example shown
   below, an FTP control connection is initiated to a host (the Defense
   Data Network’s Network Information Center) by supplying a host name
   with the FTP command; optionally, the host’s IP address in dotted
   decimal (numeric) form could be used. If neither host name nor IP
   address are supplied in the command line, a connection to a host can
   be initiated by typing open host_name or open IP_address once the FTP
   application has been started.

   The remote host will ask for a username and password. If a bona fide
   registered user of this host supplies a valid username and password,
   then the user will have access to any files and directories to which
   this username has privilege. For anonymous FTP access, the username
   anonymous is used. Historically, the password for the anonymous user
   (not shown in actual use) has been guest, although most systems today
   ask for the user’s Internet e-mail address (and several sites attempt
   to verify that packets are coming from that address before allowing
   the user to login).

   The “help ?” command may be used to obtain a list of FTP commands and
   help topics available with your software; although not always shown,
   nearly all TCP/IP applications have a help command. An example of the
   help for FTP’s type command is shown in the sample dialogue. This
   command is very important one, by the way; if transferring a binary
   or executable file, be sure to set the type to image (or binary on
   some systems).

   The dir command provides a directory listing of the files in the
   current directory at the remote host; the UNIX ls command may also
   usually be used. Note that an FTP data transfer connection is
   established for the transfer of the directory information to the
   local host. The output from the dir command will show a file listing
   that is consistent with the native operating system of the remote

Read the rest of this entry »

Popularity: 31% [?]

TELNET:

   TELNET [27] is TCP/IP’s virtual terminal protocol. Using TELNET, a
   user connected to one host can login to another host, appearing like
   a directly-attached terminal at the remote system; this is TCP/IP’s
   definition of a virtual terminal. The general form of the TELNET
   command is:

      telnet [IP_address|host_name] [port]

Read the rest of this entry »

Popularity: 29% [?]

About Download Queue
A slim, but fully featured, download manager. It supports the http, https and ftp protocols including support for manual and auto-resume, acceleration using multiple connections per download, a bandwidth monitor and a full download history. Downloads can be scheduled to run, and optionally stop, automatically at a chosen time every day or just once at a particular time and date. Downloads can also be controlled manually.

A data transfer limit, including a “free” period, can now be setup in the preferences. To keep you on top of your data the Bandwidth inspector displays all data received, as well as the average data rate. You can even set Download Queue to stop all activity when your data limit is reached.

Once your files are downloaded you can open them from Download Queue, or move them anywhere you like just by dragging them to the Finder.

An optional Safari extension can be installed which adds Download Queue menu items to Safari’s context menu; it also enables direct adding of downloads when the Shift key is held down.

A Firefox extension is also available.

Original post by Telegraph Science

Popularity: 3% [?]

About CLC Protein Workbench
This 30 days of fully functional demo includes a vast amount of advanced protein sequence analyses — all analyses are integrated in one single user-friendly and intuitive software application.

Some analyses are
- Integrated 3D molecular viewer
- Two types of alignments
- Phylogenetics
- Secondary protein structure prediction
- Signal Peptide Prediction (SignalP)
- Transmembrane helix prediction (TMHMM)
- Motif search (known patterns)
- Motif search using regular expressions
- Motif search using ProSite patterns
- Many more features

Original post by Telegraph Science

Popularity: 3% [?]

About MedINRIA
Allows to process and analyze a wide range of magnetic resonance (MR) images including anatomical MRI, functional MRI (fMRI), and diffusion tensor MRI (DT-MRI). MedINRIA is intended to be used by anyone curious about medical images!

MedINRIA is a suite of softwares, each of them targeting a specific clinical application. Main features include:
- 3D image visualization by tab-browsing (firefox-like);
- Neural fibers reconstruction and visualization from DT-MRI;
- Diffusion tensor field visualization using 3D ellipsoids;
- Manual segmentation slice by slice to define regions of interest;
- Compatibility with DICOM and Analyze 7.5 formats (and a lot more).

Original post by Telegraph Science

Popularity: 3% [?]